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rformassspectrometry / Spectra

Low level infrastructure to handle MS spectra
https://rformassspectrometry.github.io/Spectra/
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Externalize hdf5 backend? #264

Closed meowcat closed 1 year ago

meowcat commented 1 year ago

Hi,

the MsBackendHdf5 obviously carries rhdf5 as a dependency. This makes build times quite long on Linux, when using Spectra in a docker. Could it be considered to move it to a separate package like other backends?

meowcat commented 1 year ago

Forget it. There's tons of other things that also take long :D

jorainer commented 1 year ago

hm - it also puzzles me a bit; what docker container are you using? if you used the bioconductor/bioconductor_docker:devel (or maybe also with the :RELEASE_3_16) then binary linux packages would be available and nothing would needed to be compiled?

meowcat commented 1 year ago

We were using another one, but now back to bioconductor devel.