Problem with Waters raw file

rformassspectrometry / Spectra

Low level infrastructure to handle MS spectra

https://rformassspectrometry.github.io/Spectra/

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Problem with Waters raw file #310

Open sardnar opened 4 months ago

sardnar commented 4 months ago

Hello,

Thank you for maintaining this great tool. I have a problem with importing raw spectra from waters instrumnet. I have installed MsBackendRawFileReader and I have passed it as backend to my Spectra() call. But I get the following error:

1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in file(con, "r"): cannot open the connection

Thanks!

jorainer commented 4 months ago

Can you please also provide the rest of the code, not just the error message?

Also, I'm pinging @cpanse , since the MsBackendRawFileReader was developed by his group.

jorainer commented 4 months ago

Ah, and I've just seen the title - I'm not sure if Waters raw files are in the same format than the Thermo raw files - AFAIK MsBackendRawFileReader supports only Thermo files.