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rformassspectrometry / Spectra

Low level infrastructure to handle MS spectra
https://rformassspectrometry.github.io/Spectra/
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Visualize, use plotSpectraMirror function to draw spectrum matching results #319

Closed v-v1150n closed 1 month ago

v-v1150n commented 1 month ago

I have now completed the Spectra match and got the results. Now I want to use the plotSpectraMirror function to plot all these compounds, but I am not sure how to check that these matched spectra correspond to the two msps file. The index value of the file content. Is there any way I can find the respective index value? The following is the content of my file

> summary(sample_msp)
 Length   Class    Mode 
    373 Spectra      S4 

> summary(mona_spec_libno)
 Length   Class    Mode 
  18915 Spectra      S4 

> mtch_mona
Object of class MatchedSpectra 
Total number of matches: 7 
Number of query objects: 373 (7 matched)
Number of target objects: 18915 (2 matched)
jorainer commented 1 month ago

I'm closing this issue and answer in the duplicated issue at https://github.com/sneumann/xcms/issues/744