lgatto
commented
5 years ago Note in particular table 1, listing modification databases:
| database name | CTDP recommendation | URL |
|---|---|---|
| Unimod | default | http://www.unimod.org/modifications_list.php |
| UniProt | recommended | https://www.uniprot.org/docs/ptmlist |
| RESID | recommended | http://pir.georgetown.edu/resid/resid.shtml |
| PSI-MOD | recommended | http://www.ebi.ac.uk/ols/ontologies/mod |
| UniCarbKB | acceptable | http://www.unicarbkb.org/ |
| PRO Ontology/NCBI | acceptable | http://pir.georgetown.edu/pro/ |
Possibly of interest: ProForma: A Standard Proteoform Notation.