rg2
commented
3 years ago - AVFoundation is used to write videos on MacOS when ffmpeg is not found,
- Single-view pelvis registration example now has option to skip log remap - useful when running on projection data that has already been remapped, such as conventional radiographs (e.g. not intraoperative fluoroscopy),
- Adding readers for data formats from the Ljubljana 2D/3D datasets (.rad/.raw and .sta/.raw),
- Adding general utility function and a command line tool for converting planar radiography DICOM files (such as fluoroscopy or portable X-ray imaging) into the xReg projection data structure - this replaces any need for specific CIOS Fusion convertors,
- Adding some more options to the tool for adding landmarks to projection data HDF5,
- DICOM metadata reader updates:
- Fix bug with failed assertion on convolution kernel from Siemens CT scanner,
- Using boost::optional for optional fields instead of an additional boolean variable,
- Adding many more fields, mostly those used with fluoroscopy or radiographs,
- Adding HDF5 (de)serialization of DICOM fields - useful for storing original metadata in HDF5 projection data files,
- Updates to the DICOM volume converter and resampled program:
- More options for determining output file names,
- Ability to exclude input series based on derived, secondary, or modality,
- In tool for extracting NIFTI from xReg HDF5 projection data file, added an option for discarding geometry information,
- Adding tool for creating a video from a directory of 2D images,
- Fixing bugs in 2D/3D registration replay tool:
- Always use even frame dimensions - required by ffmpeg,
- Fixed issue where view border thickness was at most 1 pixel,
- Fixed border thickness bug in projection data tile and remap tool,
- Adding a tool for batch remapping a directory of DICOM files to a collection of 2D images - e.g. PNG or JPEG,
- In DICOM metadata report tool, can now skip printing all fields verbatim and also added ability to print out the DICOM fields as parsed into the xReg DICOM struct,
- Updated boost source URLs in build scripts,
- Added support for terminals with zero width or height to the program options utility,
- Adding some new combinatorial utility functions (e.g. binomial coefficient, sampling random combinations, brute-forcing all choices of 3 or 4 objects),
- Fixing a bug when writing zero-length (empty) strings to HDF5,
- Adding routine for fitting a 2D circle from points using RANSAC,
- Various other miscellaneous updates.