Example stacks used in usage.ipynb should be smaller (fewer images per stack)

rg314 / pytraction

Bayesian Traction Force Microscopy

BSD 3-Clause "New" or "Revised" License

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Example stacks used in usage.ipynb should be smaller (fewer images per stack) #25

Open AndreaDimitracopoulos opened 3 years ago

AndreaDimitracopoulos commented 3 years ago

Currently, TractionForce.process_stack() takes a while to run on the example files in usage.ipynb since they are made of more than 10 images per stack. For demonstration purposes 3-5 images per stack would be plenty.

AndreaDimitracopoulos commented 3 years ago

For Example 2, the images downloaded are not cropped so they take longer than necessary to process.

rg314 commented 3 years ago

I could also add an option in the process stack to process up to a specific frame... what you do think?

rg314 commented 3 years ago

For Example 2, the images downloaded are not cropped so they take longer than necessary to process.

Also forgot to update the usage as crop is now a kwarg in the process stack function because of #23