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rg314 / pytraction

Bayesian Traction Force Microscopy
BSD 3-Clause "New" or "Revised" License
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training data for cell segmentation #4

Open rg314 opened 3 years ago

rg314 commented 3 years ago

We need some training data to enable automatic cell segmentation

1) Cancer cells from Aki 2) Cells from @andimi 3) Axons from @rg314

This can either be a polygon or masked image.

rg314 commented 3 years ago

See more details for training in #2

rg314 commented 3 years ago

Aki suggested using the cellpose python API instead that is very good a segmentation. @andimi it would be nice to have a python API for your modification of cellpose ;)

a19s commented 3 years ago

Aki suggested using the cellpose python API instead that is very good a segmentation. @andimi it would be nice to have a python API for your modification of cellpose ;)

Yes, ideally we'll have a web API that can be called without the need of installing any more packages.