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rgcgithub / regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
https://rgcgithub.github.io/regenie
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terminate called after throwing an instance of 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >' #410

Open zillurbmb51 opened 1 year ago

zillurbmb51 commented 1 year ago

Hi, I was trying to run regeneie (v2.5.3) step 2 for burden test with many genes in my gene sets for ukb exome data. It was running without any error but after a while it is throwing error:

  -reading in genotypes and building masks...terminate called after throwing an instance of 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >'

Aborted

Any help?

joellembatchou commented 1 year ago

Hi,

Can you try with the newest version release and if you still get error, can you rerun for the specific set (using --extract-setlist) with --debug and include the log from stdout && stderr?

Thanks, Joelle