mitochondrial genome-wide association studies

rgcgithub / regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

https://rgcgithub.github.io/regenie

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Open cute-mints opened 8 months ago

cute-mints commented 8 months ago

Is REGENIE capable of analyzing mitochondrial genomes?
If yes, what are the parameters that I need to set to analyze mitochondrial genomes?

joellembatchou commented 8 months ago

Hi,

REGENIE only handles genotype data stored in hard-call or dosage mode (see here for details) so you'd need the data to fit into this format.

Cheers, Joelle