Encountered a problem when running the program, need some help

rhhao / csMR

Perform cell-stratified MR analysis through integrating GWAS and QTL data

GNU General Public License v3.0

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Encountered a problem when running the program, need some help #2

Closed Bxbc closed 1 month ago

Bxbc commented 2 months ago

When using a linux serve(4 core & 8G) to run this job on the example data you suggest, I can' t get the result after around 5-6 hours cost. And the snakemake log shows the info as below:

Could you give me some tips on how to solve this error? Thank you very much!

LockenLiu commented 2 months ago

hi, you should try the command shown in the error message to check the exact error: python scripts/split. _GWAS_ma-py -ma /home/medical/CMR/example/BMI_GWAS/BMI_giant_ukbb_combined_2018.chr1-ma -w 100000 -r /home/medical/csMR/data/reference_genome_1000G_EUR -id BMI_Giant_UKB -0 CSMR-EXAMPLE