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rhine3 / bioacoustics-software

A list of free and paid software available for bioacoustic analyses
https://rhine3.github.io/bioacoustics-software/
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Thread of additions + updates #4

Closed louisfh closed 1 year ago

louisfh commented 2 years ago

Name: Deepsqueak

A Matlab package

https://github.com/DrCoffey/DeepSqueak

Open Source

NickleDave commented 2 years ago

Another project that also uses neural networks for object detection to identify calls: https://www.dietrich-lab.org/vocalmat

Same goal but segments audio with an algorithm instead of treating it as a computer vision task: https://github.com/rtachi-lab/usvseg

Can test the Google form with these :slightly_smiling_face:

NickleDave commented 2 years ago

And this that just came out today :stuck_out_tongue: https://asa.scitation.org/doi/full/10.1121/10.0012350 https://github.com/DiogoMPessoa/Mice-USVs-segmentation-and-classification

NickleDave commented 2 years ago

Oh right, and one more https://github.com/mvansegbroeck/mupet

NickleDave commented 2 years ago

And https://github.com/shainetser/TrackUSF

rhine3 commented 2 years ago

Add Wildtrax - https://www.wildtrax.ca/home

rhine3 commented 2 years ago

Suggestions from Michael Pitzrick at CLO:

The BirdNET link in your list is deprecated. The current URL is github.com/kahst/BirdNET-Analyzer. Note that BirdNET Analyzer is now available as a Windows application with GUI support, so may be more accessible to non-programmers than before.

MANTA enables valid comparison between soundscapes and identification of ambient ocean sound trends required by ocean stakeholders.

eBird now recommends Ocenaudio and WavePad (in addition to Audition and Audacity) for sound editing, so perhaps these would be worthy of your list. See Audio preparation and upload guidelines.

Sox-o-matic is utility software designed to compress audio, convert audio format, and rename audio files in batches.

rhine3 commented 2 years ago

Add das: https://github.com/janclemenslab/das

rhine3 commented 2 years ago

Add soundClass -- bioacoustic CNN training in R

https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.13964?af=R

rhine3 commented 2 years ago

Add CASE

https://www.mdpi.com/2076-2615/12/16/2020

rhine3 commented 1 year ago

Add ANIMAL-SPOT https://www.nature.com/articles/s41598-022-26429-y

rhine3 commented 1 year ago

Working through these updates--giving them a 👍 once I've added them or a 👎 if I have reviewed them and decided not to include them.

For example:

And https://github.com/shainetser/TrackUSF

I think I'm not going to add this, because it's not recent or under active development (most recent update was 2 years ago).

rhine3 commented 1 year ago

All updates above been made to the spreadsheet. We will integrate these updates into a website in #3; the README will no probably longer contain the list.