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rhondabacher / SCnorm

Normalization for single cell RNA-seq data
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Using SCNorm with scRNA-seq with no multiple conditions #32

Open HaniJieunKim opened 3 years ago

HaniJieunKim commented 3 years ago

Hi!

Is it possible use SCNorm on a dataset without multiple conditions?

I receive an error that says I must Must supply conditions.

Thanks in advance for answering my query.

Best regards,

Hani

rhondabacher commented 3 years ago

Hi Hani,

Thank you for the message. Yes, you can set the conditions parameter as: rep("1", ncol(yourData)) to indicate the cells are all from the same condition.

Best, Rhonda

On Tue, Mar 23, 2021 at 1:40 AM Hani Kim @.***> wrote:

Hi!

Is it possible use SCNorm on a dataset without multiple conditions?

I receive an error that says I must Must supply conditions.

Thanks in advance for answering my query.

Best regards,

Hani

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/rhondabacher/SCnorm/issues/32, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABSOD3BRAOMQECPILMPCHF3TFASU5ANCNFSM4ZUPLFAQ .

-- Rhonda Bacher, PhD Assistant Professor Department of Biostatistics University of Florida Office: 5239 CTRB Phone: 352-294-5914 Email: @.***

http://rhondabacher.com/

HaniJieunKim commented 3 years ago

Great! Thank you!