rhondabacher
commented
3 years ago Hi Feiran,
Thanks for using SCnorm! If you have a data matrix named Data, then you can add rownames via: rownames(Data) <- (your vector containing row names)
If you are just trying to run an example then you could temporarily do something like: rownames(Data) <- as.character(seq(1,nrow(Data)))
If this does not resolve your question, please reply with the lines of code that are not working and I am happy to help.
Best, Rhonda
On Mon, Apr 19, 2021 at 10:27 PM Feiran Xiang @.***> wrote:
hey, I am sorry to bother you. When I use SCnorm to normalisation the dataset. it alerts that "Must supply gene/row names!". But I do it follow the SCnorm_vignette.pdf. What should I do about it? Do I need to provide the row names for SCnorm. And how can I provide row names to SCnorm? Thanks. Best regards.
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-- Rhonda Bacher, PhD Assistant Professor Department of Biostatistics University of Florida Office: 5239 CTRB Phone: 352-294-5914 Email: @.***
hey, I am sorry to bother you. When I use SCnorm to normalisation the dataset. it alerts that "Must supply gene/row names!". But I do it follow the SCnorm_vignette.pdf. What should I do about it? Do I need to provide the row names for SCnorm. And how can I provide row names to SCnorm? Thanks. Best regards.