rhpvorderman / sequali

Fast sequencing data quality metrics
GNU Affero General Public License v3.0
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Always use staging #29

Closed rhpvorderman closed 1 year ago

rhpvorderman commented 1 year ago

Checklist

Always use staging in metrics. This simplifies the code a bit. The while loop is apparently a little faster than the equivalent for loop and that is enough to mitigate the damage for Illumina files (nanopore was using it anyway). The while loop also allows for better vectorization.