Sequali version was 0.2.0. The command was just sequali inputfile.fastq.
The data is Nanopore reads. I cannot share it, but probably you’ll be able to figure out where the problem is from the stacktrace alone:
Traceback (most recent call last):
File ".../.venv/bin/sequali", line 8, in <module>
sys.exit(main())
File ".../.venv/lib/python3.10/site-packages/sequali/__main__.py", line 154, in main
report_modules = calculate_stats(
File ".../.venv/lib/python3.10/site-packages/sequali/report_modules.py", line 1548, in calculate_stats
*qc_metrics_modules(metrics, data_ranges),
File ".../.venv/lib/python3.10/site-packages/sequali/report_modules.py", line 1518, in qc_metrics_modules
PerPositionMeanQualityAndSpread.from_phred_table_and_labels(
File ".../.venv/lib/python3.10/site-packages/sequali/report_modules.py", line 441, in from_phred_table_and_labels
accumulated_errors / accumulated_count))
ZeroDivisionError: float division by zero
rhpvorderman
commented
10 months ago
Sorry, another bug report ...
Sequali version was 0.2.0. The command was just
sequali inputfile.fastq.The data is Nanopore reads. I cannot share it, but probably you’ll be able to figure out where the problem is from the stacktrace alone: