Closed rhysnewell closed 2 months ago
Batch test was not correctly setting long_read_type in the config file due to missing medaka_model parameters in the parsed arguments. Additionally, the batch mode was not checking if the long read type was valid like other CLI usage does.
long_read_type
medaka_model
Batch test was not correctly setting
long_read_typein the config file due to missingmedaka_modelparameters in the parsed arguments. Additionally, the batch mode was not checking if the long read type was valid like other CLI usage does.