Some tertiary contacts (e.g., between L88 in Domain V central protuberance and H22 in domain III) are not being displayed at all as they are due to backbone contacts.
Some stacks should be displayed (e.g., in intercalated T-loops!).
Auto-recognize these & plot. May need fine-level setting of visible inside Linker objects rather than global hide_other_contacts.
Auto-recognize these & plot. May need fine-level setting of visible inside Linker objects rather than global
hide_other_contacts.