search

ribokit / RiboDraw

Semiautomated layout of RNA tertiary structure diagrams
MIT License
8 stars 4 forks source link

Autocolor motifs found by `rna_motif` #3

Closed rhiju closed 5 years ago

rhiju commented 6 years ago

Read in motifs.txt file. Color sarcin-ricin-like loop motifs green, U-turns blue, etc. (see color_motifs.pml for first pass). Put those color patches behind nucleotides with move_stuff_to-back. Should look nice. For intercalated T-loops may want to put in some heuristic thing to create linker(s) between the intercalated purine and the base pairs into which it stacks.

rhiju commented 6 years ago

Let's visualize if the classic Kink Turns in the ribosome are pulled out, as described in this Steitz paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC149158/ . Especially since Andy made progress on #4.

rhiju commented 5 years ago

Ready to go in https://github.com/ribokit/RiboDraw/commit/75ab25e34586935d245a2678b924ebd0c47b0224 and immediately subsequent commits.