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ribokit / RiboDraw

Semiautomated layout of RNA tertiary structure diagrams
MIT License
8 stars 4 forks source link

Initialization from secstruct alone (no PDB) #7

Closed rhiju closed 3 years ago

rhiju commented 7 years ago

Allow initialization from sequence and secstruct. I wonder if we should also include a better heuristic for the initial helix layout too. Could potentially also allow helices to get laid out along directions that are not horizontal/vertical, like in VARNA, FORNA, eterna, etc.

rhiju commented 5 years ago

Almost complete with new initialize_drawing mode that accepts just .fasta and .stems.txt to get going. Check out https://github.com/ribokit/RiboDraw/commit/de8a9fde167bdc449f04bac968da28518af80285

everyday847 commented 5 years ago

oh this is fantastic!

On Thu, Oct 31, 2019 at 6:33 PM Rhiju Das notifications@github.com wrote:

Almost complete with new initialize_drawing mode that accepts just .fasta and .stems.txt to get going. Check out de8a9fd https://github.com/ribokit/RiboDraw/commit/de8a9fde167bdc449f04bac968da28518af80285

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rhiju commented 3 years ago

Did this! And added info in tutorial.