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richardbsessions / BUDE_SM

This code leverages BUDE functionality to perform saturation mutagenesis. A typical use would be to optimise a peptide ligand to improve binding to its partner
Apache License 2.0
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Error in running #1

Open mtpae opened 2 years ago

mtpae commented 2 years ago

Hello all, I have downloaded the BUDE_SM python script and also installed BUDE_master, but I am not able to run it. I am getting errors of module not found. I have attached the image of the error. Please help me in this. bude_ms_error

richardbsessions commented 2 years ago

Hi, you will need to install Isambard first https://github.com/isambard-uob/isambard Right Chris?

[https://opengraph.githubassets.com/e798d09b3dc1c0bd249b897bf46174afafeb5c03409768b4fbd6e380564f3dc1/isambard-uob/isambard]https://github.com/isambard-uob/isambard isambard-uob/isambard: Intelligent System for Analysis, Model Building And Rational Design of biomolecules. - GitHubhttps://github.com/isambard-uob/isambard ISAMBARD. Intelligent System for Analysis, Model Building And Rational Design. ISAMBARD is a Python-based framework for structural analysis and rational design of biomolecules, with a particular focus on parametric modelling of proteins. github.com

From: mtpae @.> Sent: 11 February 2022 06:19 To: richardbsessions/BUDE_SM @.> Cc: Subscribed @.***> Subject: [richardbsessions/BUDE_SM] Error in running (Issue #1)

Hello all, I have downloaded the BUDE_SM python script and also installed BUDE_master, but I am not able to run it. I am getting errors of module not found. I have attached the image of the error. Please help me in this. [bude_ms_error]https://user-images.githubusercontent.com/92774704/153545795-28140098-adbb-4140-acb1-68cafa2a397a.png

— Reply to this email directly, view it on GitHubhttps://github.com/richardbsessions/BUDE_SM/issues/1, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AEEIMDRMEFR3NRCXQLIO5G3U2SS6TANCNFSM5ODG56HA. Triage notifications on the go with GitHub Mobile for iOShttps://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Androidhttps://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub. You are receiving this because you are subscribed to this thread.Message ID: @.***>

mtpae commented 2 years ago

I have installed it but still getting the same error. bude_ms_error2

richardbsessions commented 2 years ago

Hmm, Chris Wood is the Isambard author and specialist. What do you think Chris?

From: mtpae @.> Sent: 11 February 2022 06:19 To: richardbsessions/BUDE_SM @.> Cc: Subscribed @.***> Subject: [richardbsessions/BUDE_SM] Error in running (Issue #1)

Hello all, I have downloaded the BUDE_SM python script and also installed BUDE_master, but I am not able to run it. I am getting errors of module not found. I have attached the image of the error. Please help me in this. [bude_ms_error]https://user-images.githubusercontent.com/92774704/153545795-28140098-adbb-4140-acb1-68cafa2a397a.png

— Reply to this email directly, view it on GitHubhttps://github.com/richardbsessions/BUDE_SM/issues/1, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AEEIMDRMEFR3NRCXQLIO5G3U2SS6TANCNFSM5ODG56HA. Triage notifications on the go with GitHub Mobile for iOShttps://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Androidhttps://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub. You are receiving this because you are subscribed to this thread.Message ID: @.**@.>>

ChrisWellsWood commented 2 years ago

Hi @richardbsessions, this isn't one of our files I'm afraid, I think it might be some utility functions that Amaurys has made. I can't see it in the BudeAlaScan code so I'm not sure where it's meant to come from.

richardbsessions commented 2 years ago

OK, thanks Chris. I will contact Amaurys.

From: Chris Wells Wood @.> Sent: 14 February 2022 10:23 To: richardbsessions/BUDE_SM @.> Cc: Richard Sessions @.>; Mention @.> Subject: Re: [richardbsessions/BUDE_SM] Error in running (Issue #1)

Hi @richardbsessionshttps://github.com/richardbsessions, this isn't one of our files I'm afraid, I think it might be some utility functions that Amaurys has made. I can't see it in the BudeAlaScan code so I'm not sure where it's meant to come from.

— Reply to this email directly, view it on GitHubhttps://github.com/richardbsessions/BUDE_SM/issues/1#issuecomment-1038910522, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AEEIMDTWZ2R2BII4SLL5N2TU3DJZFANCNFSM5ODG56HA. Triage notifications on the go with GitHub Mobile for iOShttps://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Androidhttps://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub. You are receiving this because you were mentioned.Message ID: @.***>