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richarddurbin
/
pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
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PBWT -paint bugfixes and documentation
#54
danjlawson
closed
6 months ago
0
fix typo in help (writeTranspose[d]Haplotypes)
#53
jts
closed
1 year ago
1
Is it valid VCF not to 'squash' positions with more than one ALT allele?
#52
CholoTook
opened
2 years ago
10
Some rsIDs in original VCF not in imputed VCF
#51
CholoTook
opened
2 years ago
7
Make up to date with VertebrateResequencing / pbwt ?
#50
CholoTook
opened
2 years ago
4
Reference impute using maximal matches: Killed
#49
jerrywzy
opened
3 years ago
2
Running 'make' on pbwt - "undefined reference to 'curl_..." errors
#48
jerrywzy
closed
4 years ago
2
adding LICENSE file
#47
bgruening
opened
5 years ago
4
Make fails: recipe for target 'pbwtCore.o' failed
#46
complexgenome
closed
6 years ago
3
can't compile
#45
dauss75
closed
6 years ago
5
unable to build pbwt
#44
pauline-ng
closed
6 years ago
1
MaCS command not found
#43
Asure89
closed
7 years ago
0
Bug in reading genotypes from VCF/BCF?
#42
dfguan
opened
7 years ago
1
writePhase writing binary 0/1 instead of ASCII 0/1
#41
grady
opened
8 years ago
0
revised typos for subsampling individuals and writeTransposedHaplotypes
#40
aabiddanda
closed
1 year ago
0
Fixed -writeTransposedHaplotypes and -writePhase
#39
danjlawson
closed
3 years ago
0
Build error from git clone
#38
grady
closed
8 years ago
1
Added -writePhase and fixed a bug in the locations read by -readPhase
#37
danjlawson
closed
8 years ago
0
fix dependencies in the Makefile
#36
mcshane
closed
8 years ago
0
BSD mergesort is not portable
#35
jeromekelleher
closed
8 years ago
7
Please tag a stable release
#34
sjackman
opened
9 years ago
2
Bug in algorithm ReportLongMatches?
#33
pd3
opened
9 years ago
1
"Undefined reference" link-time error
#32
yunusbb
closed
9 years ago
4
change allele dosage annotation from AD to ADS to avoid collision wit…
#31
mcshane
closed
9 years ago
0
bugfix for reading and writing samples files
#30
mcshane
closed
9 years ago
0
cleanup git hash string
#29
mcshane
closed
9 years ago
1
add a command -log to allow logging to a file
#28
mcshane
closed
9 years ago
0
bugfix so that pbwt does not crash when reading a VCF site with no ALT a...
#27
mcshane
closed
9 years ago
0
Clean makefiles, add installation instructions, fix readHap
#26
johnlees
closed
9 years ago
4
include dosages when -readAll
#25
mcshane
closed
9 years ago
0
print pbwt version and command line (second try)
#24
mcshane
closed
9 years ago
1
if available, use dosages when writing GEN files
#23
mcshane
closed
9 years ago
0
write dosages in VCF output
#22
mcshane
closed
9 years ago
0
paintSparse added
#21
danjlawson
closed
9 years ago
2
print pbwt version and command line
#20
mcshane
closed
9 years ago
2
support for writing out BCF
#19
mcshane
closed
9 years ago
0
add test for referenceImpute
#18
mcshane
closed
9 years ago
0
add VCF INFO fields for r^2 and ref panel AF
#17
mcshane
closed
10 years ago
1
bugfix for a corner case in matchSequencesSweep
#16
mcshane
closed
10 years ago
0
Fixed a typo: PBW3 implies version 3, not 2
#15
pd3
closed
10 years ago
1
fix in VCF header output
#14
pd3
closed
10 years ago
1
genotypeComparePbwt: bugfix
#13
mcshane
closed
10 years ago
0
readVcfGT: split non-biallelic records rather then skipping
#12
mcshane
closed
10 years ago
0
HTSlib as a git submodule
#11
kdm9
closed
10 years ago
0
update example to use -readMacs instead of -macs
#10
arq5x
closed
10 years ago
0
Is the -macs command deprecated?
#9
arq5x
closed
10 years ago
2
update for latest htslib API
#8
mcshane
closed
10 years ago
1
Build difficulty with HTSlib
#7
kdm9
closed
10 years ago
4
advertise -writeVcf in the help message
#6
mcshane
closed
10 years ago
1
jl11 changes to pbwt code
#5
johnlees
closed
10 years ago
1
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