grjd commented 3 years ago

Hi I am getting this error message when I call GannetLoad I share the P file from GE here Thanks, Jaime

MRS = GannetLoad({'P03072.7'});

Robust spectral registration - Iteration: 128 Robust spectral registration - Iteration: 128

Performing weighted averaging of subspectra...

Filtering out residual water signal...

Warning: ** An error occured while loading dataset: 'P03072.7'. Check data. Skipping to next dataset in batch **

In GannetLoad (line 920) Warning: Control Character '\P' is not valid. See 'doc sprintf' for control characters valid in the format string. In GannetLoad (line 921)

** ERROR REPORT **

Filename: P03072.7

Error using set Value must be a handle

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('GannetPlotPrePostAlign', 'C:

markmikkelsen commented 3 years ago

Hi Jaime,

I was able to run your data with no issues. See attached.

Which version of MATLAB are you using? And are you on Windows, Linux, or macOS?

It's also worth checking you have all the necessary MATLAB toolboxes installed.

Mark

grjd commented 3 years ago

Hi Mark,

I am running Matlab 2015a on Windowx 10. I set the path as in the instructions again but got the same ERROR See results of "ver" command for Matlan version and toolboxes

addpath(genpath('C:\Program Files\MATLAB\MATLAB Production Server\R2015a\toolbox\Gannet3.1-master')); savepath MRS = GannetLoad({'P03072.7'});

Robust spectral registration - Iteration: 128 Robust spectral registration - Iteration: 128

Performing weighted averaging of subspectra...

Filtering out residual water signal...

Warning: ** An error occured while loading dataset: 'P03072.7'. Check data. Skipping to next dataset in batch **

In GannetLoad (line 920) Warning: Control Character '\P' is not valid. See 'doc sprintf' for control characters valid in the format string. In GannetLoad (line 921)

** ERROR REPORT **

Filename: P03072.7

Error using set Value must be a handle

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('GannetPlotPrePostAlign', 'C:

ver

MATLAB Version: 8.5.0.197613 (R2015a) MATLAB License Number: 161052 Operating System: Microsoft Windows 10 Pro Version 10.0 (Build 18363) Java Version: Java 1.7.0_60-b19 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode

MATLAB Version 8.5 (R2015a) Simulink Version 8.5 (R2015a) Aerospace Blockset Version 3.15 (R2015a) Aerospace Toolbox Version 2.15 (R2015a) Antenna Toolbox Version 1.0 (R2015a) Bioinformatics Toolbox Version 4.5.1 (R2015a) Communications System Toolbox Version 6.0 (R2015a) Computer Vision System Toolbox Version 6.2 (R2015a) Control System Toolbox Version 9.9 (R2015a) Curve Fitting Toolbox Version 3.5.1 (R2015a) DO Qualification Kit Version 2.5 (R2015a) DSP System Toolbox Version 9.0 (R2015a) Data Acquisition Toolbox Version 3.7 (R2015a) Database Toolbox Version 5.2.1 (R2015a) Datafeed Toolbox Version 5.1 (R2015a) EEGLAB Toolbox to process EEG data Version - see
Econometrics Toolbox Version 3.2 (R2015a) Embedded Coder Version 6.8 (R2015a) Filter Design HDL Coder Version 2.9.7 (R2015a) Financial Instruments Toolbox Version 2.1 (R2015a) Financial Toolbox Version 5.5 (R2015a) Fixed-Point Designer Version 5.0 (R2015a) Fuzzy Logic Toolbox Version 2.2.21 (R2015a) Global Optimization Toolbox Version 3.3.1 (R2015a) HDL Coder Version 3.6 (R2015a) HDL Verifier Version 4.6 (R2015a) IEC Certification Kit Version 3.5 (R2015a) Image Acquisition Toolbox Version 4.9 (R2015a) Image Processing Toolbox Version 9.2 (R2015a) Instrument Control Toolbox Version 3.7 (R2015a) LTE System Toolbox Version 2.0 (R2015a) MATLAB Coder Version 2.8 (R2015a) MATLAB Compiler Version 6.0 (R2015a) MATLAB Compiler SDK Version 6.0 (R2015a) MATLAB Distributed Computing Server Version 6.6 (R2015a) MATLAB Report Generator Version 4.1 (R2015a) Mapping Toolbox Version 4.1 (R2015a) Model Predictive Control Toolbox Version 5.0.1 (R2015a) Model-Based Calibration Toolbox Version 4.8.1 (R2015a) Neural Network Toolbox Version 8.3 (R2015a) OPC Toolbox Version 3.3.3 (R2015a) Optimization Toolbox Version 7.2 (R2015a) Parallel Computing Toolbox Version 6.6 (R2015a) Partial Differential Equation Toolbox Version 2.0 (R2015a) Phased Array System Toolbox Version 3.0 (R2015a) Polyspace Bug Finder Version 1.3 (R2015a) Polyspace Code Prover Version 9.3 (R2015a) RF Toolbox Version 2.16 (R2015a) Robotics System Toolbox Version 1.0 (R2015a) Robust Control Toolbox Version 5.3 (R2015a) Signal Processing Toolbox Version 7.0 (R2015a) SimBiology Version 5.2 (R2015a) SimDriveline Version 2.8 (R2015a) SimElectronics Version 2.7 (R2015a) SimEvents Version 4.4 (R2015a) SimHydraulics Version 1.16 (R2015a) SimMechanics Version 4.6 (R2015a) SimPowerSystems Version 6.3 (R2015a) SimRF Version 4.4 (R2015a) Simscape Version 3.13 (R2015a) Simulink 3D Animation Version 7.3 (R2015a) Simulink Code Inspector Version 2.3 (R2015a) Simulink Coder Version 8.8 (R2015a) Simulink Control Design Version 4.2 (R2015a) Simulink Design Optimization Version 2.7 (R2015a) Simulink Design Verifier Version 2.8 (R2015a) Simulink Desktop Real-Time Version 5.0 (R2015a) Simulink PLC Coder Version 1.9 (R2015a) Simulink Real-Time Version 6.2 (R2015a) Simulink Report Generator Version 4.1 (R2015a) Simulink Test Version 1.0 (R2015a) Simulink Verification and Validation Version 3.9 (R2015a) Spreadsheet Link EX Version 3.2.3 (R2015a) Stateflow Version 8.5 (R2015a) Statistical Parametric Mapping Version 7771 (SPM12) Statistics and Machine Learning Toolbox Version 10.0 (R2015a) Symbolic Math Toolbox Version 6.2 (R2015a) System Identification Toolbox Version 9.2 (R2015a) SystemTest Version 2.6.9 (R2015a) Trading Toolbox Version 2.2 (R2015a) Vehicle Network Toolbox Version 2.4 (R2015a) Vision HDL Toolbox Version 1.0 (R2015a) Wavelet Toolbox Version 4.14.1

markmikkelsen commented 3 years ago

This is likely an issue with R2015a. The earliest release of MATLAB I've tested v3.1 of Gannet with is R2016a on macOS Catalina.

Try typing dbstop error in the Command Window and then rerunning your data. Please let me know in which .m file and on which line of code the debugger stops. (You can type dbclear all to stop the debugger stopping at errors.)

grjd commented 3 years ago

Hi Mark This is what I got

dbstop error GannetLoad({'P03072.7'})

Robust spectral registration - Iteration: 128 Robust spectral registration - Iteration: 128

Performing weighted averaging of subspectra...

Filtering out residual water signal...

Warning: ** An error occured while loading dataset: 'P03072.7'. Check data. Skipping to next dataset in batch **

In GannetLoad (line 920) Warning: Control Character '\P' is not valid. See 'doc sprintf' for control characters valid in the format string. In GannetLoad (line 921)

** ERROR REPORT **

Filename: P03072.7

Error using set Value must be a handle

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('GannetPlotPrePostAlign', 'C:

ans =

  version: [1x1 struct]
        p: [1x1 struct]
       ii: 1
metabfile: {'P03072.7'}
     fids: [1x1 struct]
     spec: [1x1 struct]
      out: [1x1 struct]

markmikkelsen commented 3 years ago

Did not the Editor pop up and show you where the error occurs in a particular .m file?

grjd commented 3 years ago

Thanks, Mark, I debug the GannetLoad file and I found that the error is in line 417 MRS_struct.fids.data = PhaseCorrection(MRS_struct.fids.data, MRS_struct); I will try to install those libraries and let you know (I don't these libraries anymore because I installed 2020b) //Wishing a Python Gannet...

'nanmean' requires one of the following: Financial Toolbox Statistics and Machine Learning Toolbox

Error in PhaseCorrection (line 58) d = nanmean(D);

grjd commented 3 years ago

Hi Mark, The 2020b with the Financial Toolbox made it! I run the sequences Load and Fit and got no error! I attach the spectra I got, could please let me know if they are ok? Thank you very much for your help.

fit_untitled

. GLoad_untitled

markmikkelsen commented 3 years ago

Great! That looks all good to me.

On Thu, Mar 4, 2021 at 10:13 AM grjd notifications@github.com wrote:

Hi Mark, The 2020b with the Financial Toolbox made it! I run the sequences Load and Fit and got no error! I attach the spectra I got, could please let me know if they are ok? Thank you very much for your help.

[image: fit_untitled] https://user-images.githubusercontent.com/7142903/109984733-5c7d7880-7d04-11eb-9783-e96e6527332e.png

. [image: GLoad_untitled] https://user-images.githubusercontent.com/7142903/109984533-293ae980-7d04-11eb-8918-52c14ec94f77.png

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/richardedden/Gannet3.1/issues/3#issuecomment-790689249, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABOFLZZQE5ASD34NYXLKFMLTB6PQBANCNFSM4YPUY2VQ .

richardedden / Gannet3.1

Error GannetLoad GE P file #3

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('GannetPlotPrePostAlign', 'C:

ver

MATLAB Version: 8.5.0.197613 (R2015a) MATLAB License Number: 161052 Operating System: Microsoft Windows 10 Pro Version 10.0 (Build 18363) Java Version: Java 1.7.0_60-b19 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode