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richardmleggett / nextclip

Nextera Long Mate Pair analysis and processing tool
GNU General Public License v3.0
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QC after nextclip ? #19

Open ptranvan opened 8 years ago

ptranvan commented 8 years ago

Hi,

Should we perform a QC step, with trimmomatic for instance, in order to filter out adaptor and trim low quality reads after a nextclip process ?

richardmleggett commented 8 years ago

Hi there,

Yes, I would say this is worth doing. However, I wouldn't set the quality threshold too high - use, say, Q20.

Thanks, Richard

On 1 Jul 2016, at 14:32, ptranvan notifications@github.com<mailto:notifications@github.com> wrote:

Hi,

Should we perform a QC step, with trimmomatic for instance, in order to filter out adaptor and trim low quality reads after a nextclip process ?

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