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richardmleggett / nextclip

Nextera Long Mate Pair analysis and processing tool
GNU General Public License v3.0
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Add support for pre-Casava 1.8 illumina headers #6

Closed bunbun closed 10 years ago

bunbun commented 10 years ago

I would like to add support for older fastq @ lines http://en.wikipedia.org/wiki/FASTQ_format#Illumina_sequence_identifiers

Before Casava 1.8, the nth member of a pair-end or mate pair read was encoded following a slash: e.g. 

@HWUSI-EAS100R:6:73:941:1973#0/1

After Casava 1.8, this follows a space, e.g. 

@EAS139:136:FC706VJ:2:2104:15343:197393 1:Y:18:ATCACG
richardmleggett commented 10 years ago

Thanks for this - will incorporate in next release.