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richardmleggett / nextclip

Nextera Long Mate Pair analysis and processing tool
GNU General Public License v3.0
19 stars 7 forks source link

support for gzipped files #7

Open JoseBlanca opened 10 years ago

JoseBlanca commented 10 years ago

I'm trying out nextclip with a Nextera mate-pair library. It would be great if it would be support for input gzipped files. Alternatively, support for interleaved files as input and stdout as output would also solve the problem because the input and output could be unzipped and zipped using pipes. Thaks for making your software free software.

richardmleggett commented 10 years ago

Hi Jose,

Many thanks for your comments. I will try and incorporate these ideas into a future version of the program. I hope to produce another release in a month or two.

Thanks, Richard

On 27 May 2014, at 15:06, Jose Blanca notifications@github.com<mailto:notifications@github.com> wrote:

I'm trying out nextclip with a Nextera mate-pair library. It would be great if it would be support for input gzipped files. Alternatively, support for interleaved files as input and stdout as output would also solve the problem because the input and output could be unzipped and zipped using pipes. Thaks for making your software free software.

— Reply to this email directly or view it on GitHubhttps://github.com/richardmleggett/nextclip/issues/7.