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richelbilderbeek / Cer2016

Community Ecology Research course 2016
GNU General Public License v3.0
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I broke something. #12

Closed FransThon closed 8 years ago

FransThon commented 8 years ago

Research.demo.RMD as it is here doesn't work ( plot_posterior_nltts, line 230) and despite trying to reverse the edits I made while adding my PATH, we can't get it to work on my computer. Even while cleaning and rebuilding. It still works on Jolien's laptop, with the old version, just not on mine.

So. Can you help us find the error there?

richelbilderbeek commented 8 years ago

Try to install ggplot2, clean and rebuild, then let me know if it still fails.

Tip: mention @richelbilderbeek to make me receive an email, or set me as the 'Assignee'

FransThon commented 8 years ago

@richelbilderbeek

R still doesn't agree. Now it's complaining about the boundaries of a graph 'need finite xlim values' - but the line it refers to doesn't contain the function with the error. The whole vignette doesn't.

On top of that, some screen of BEAST opens at every run of the vignette.

I'm sorry, but I don't have a clue.

richelbilderbeek commented 8 years ago

BEAST2 produces a pop-up window upon calling the .exe file. Solution was to call the .jar file with java -jar beast.jar