richelbilderbeek
commented
3 years ago - Johansson, Åsa, et al. "Identification of genetic variants influencing the human plasma proteome." Proceedings of the National Academy of Sciences 110.12 (2013): 4673-4678.
- Krasnov, George Sergeevich, et al. "PPLine: an automated pipeline for SNP, SAP, and splice variant detection in the context of proteogenomics." Journal of proteome research 14.9 (2015): 3729-3737.
- Muthusamy, Babylakshmi, et al. "Plasma Proteome Database as a resource for proteomics research." Proteomics 5.13 (2005): 3531-3536.
- Yang, Yang, et al. "AWESOME: a database of SNPs that affect protein post-translational modifications." Nucleic acids research 47.D1 (2019): D874-D880.
- Wong, Ka-Chun, and Zhaolei Zhang. "SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences." Bioinformatics 30.8 (2014): 1112-1119.
- BedTools: https://github.com/arq5x/bedtools2
- BEDOPS: https://github.com/bedops/bedops/
- GEMINI: https://gemini.readthedocs.io/en/latest/
Krasnov, George Sergeevich, et al. "PPLine: an automated pipeline for SNP, SAP, and splice variant detection in the context of proteogenomics." Journal of proteome research 14.9 (2015): 3729-3737.