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richelbilderbeek / bbbq_article

The Bianchi Bilderbeek Bogaart Question answered
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Fix represenative PureseqTM prediction #164

Closed richelbilderbeek closed 3 years ago

richelbilderbeek commented 3 years ago

Screenshot from 2021-01-25 13-29-32

richelbilderbeek commented 3 years ago

Same protein, same problem:

[1] "sp|P0DPR3|TRDD1_HUMAN T cell receptor delta diversity 1 OS=Homo sapiens (Human) OX=9606 GN=TRDD1 PE=1 SV=1"
>     t_proteome$sequence[which(nchar(t_proteome$sequence) != nchar(t_topo$sequence))]
[1] "EI"
>     t_topo$name[which(nchar(t_proteome$sequence) != nchar(t_topo$sequence))]
[1] "sp|P0DPR3|TRDD1_HUMAN T cell receptor delta diversity 1 OS=Homo sapiens (Human) OX=9606 GN=TRDD1 PE=1 SV=1"
>     t_topo$sequence[which(nchar(t_proteome$sequence) != nchar(t_topo$sequence))]
[1] ""
richelbilderbeek commented 3 years ago

Screenshot from 2021-01-25 13-31-56 Screenshot from 2021-01-25 13-32-06 Screenshot from 2021-01-25 13-33-39

richelbilderbeek commented 3 years ago

Number of characters in all topologies match now!