Allow peptide of 4 AAs - Githubissues

richelbilderbeek / bbbq_article

The Bianchi Bilderbeek Bogaart Question answered

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Allow peptide of 4 AAs #58

Closed richelbilderbeek closed 4 years ago

richelbilderbeek commented 4 years ago

The human reference proteome contains a protein of 4 amino acids long:

p230198@peregrine:bbbq_1_fast cat human.fasta | egrep "^GTGG$" -A 1 -B 1
>sp|P0DPI4|TDB01_HUMAN T cell receptor beta diversity 1 OS=Homo sapiens OX=9606 GN=TRBD1 PE=4 SV=1
GTGG
>sp|Q6N021|TET2_HUMAN Methylcytosine dioxygenase TET2 OS=Homo sapiens OX=9606 GN=TET2 PE=1 SV=3

Allow all tools to ignore it.

richelbilderbeek commented 4 years ago

Test pass. Done!