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richelbilderbeek / pbdmms

Some models
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Use Bio++ for phylogeny graph? #205

Open richelbilderbeek opened 7 years ago

richelbilderbeek commented 7 years ago

Bio++ has a graph class and a TreeGraph.

TreeGraph appears well suited for asexual species: one can addFather and addSons. For sexual species, like we have, it AFAIKS cannot be used.

Lumphie commented 7 years ago

Working with the boost graph library now. Slowly getting there. If I get most of the functions complete tomorrow I'll start implementing it in the sado branch.

richelbilderbeek commented 7 years ago

It may be your/our work will be added to the Bio++ libraries instead... :muscle:

richelbilderbeek commented 7 years ago

I posted a question on the Bio++ forum. I will only do so with a CI service present.