richelbilderbeek / pbdmms

Some models
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bdm: number of lineages absent #224

Closed JorikdeBoer closed 7 years ago

JorikdeBoer commented 7 years ago

When I cat the jobo_nltt_viables.csv file, I get this:

[s2176661@peregrine 3]$ cat jobo_nltt_viables.csv 
normalized_time,normalized_number_of_lineages
0,0.5
0.001001,1
,

The LTT plot, however is:

[s2176661@peregrine 3]$ cat jobo_ltt_viables.csv 
1,2,1,[...],1

I'd expected to measure:

[s2176661@peregrine 3]$ cat jobo_nltt_viables.csv 
normalized_time,normalized_number_of_lineages
0,0.5
0.001001,1
0.002002,0.5
1.0,0.5
JorikdeBoer commented 7 years ago

Sim paramerers are:

population_size: 1000
seed: 3
mutation_rate: 0.1
n_generations: 1000
loci: 20