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richelbilderbeek / pbdmms

Some models
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Convert graph to phylogeny to newick #237

Closed richelbilderbeek closed 7 years ago

richelbilderbeek commented 7 years ago

Kees and me are both working on a pedigree graph. In the end, it will be close to a phylogeny.

I will have to convert it to a phylogeny, then to a Newick, so that R can do an ML analysis.

richelbilderbeek commented 7 years ago

I think this has been done now. Use sado::create_reconstructed on a species graph, then sado::to_newick to get a newick, then sado::calc_max_likelihood on that Newick.