richelbilderbeek / pbdmms

Some models
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Fix: do_oclint doesn't check sado #254

Closed Lumphie closed 7 years ago

Lumphie commented 7 years ago

./do_oclint

It looks like do_oclint never checks sado.

.cpp files that will be analysed: cine_ann.cpp cine_individual.cpp cine_landscape.cpp cine_parameters.cpp cine_plot.cpp cine_population.cpp cine_simulation.cpp cine_source.cpp daic_helper.cpp daic_input.cpp daic_input_row.cpp daic_main.cpp daic_output.cpp daic_run.cpp daic_species_status.cpp elly_analyse.cpp elly_analyse_main.cpp elly_carrying_capacity.cpp elly_clade.cpp elly_clade_id.cpp elly_clades.cpp elly_event_rates.cpp elly_events.cpp elly_experiment.cpp elly_gillespie.cpp elly_helper.cpp elly_location.cpp elly_main.cpp elly_measurement.cpp elly_measurements.cpp elly_menu.cpp elly_n_species.cpp elly_parameters.cpp elly_per_species_rate.cpp elly_per_species_rates.cpp elly_populations.cpp elly_qtmain.cpp elly_qtmaindialog.cpp elly_rate.cpp elly_result.cpp elly_results.cpp elly_simulation.cpp elly_species.cpp elly_species_id.cpp histogram_to_png.cpp histogram_to_png_main.cpp jobo_genotype.cpp jobo_genotypes.cpp jobo_helper.cpp jobo_individual.cpp jobo_individuals.cpp jobo_jkr_adapters.cpp jobo_main.cpp jobo_parameters.cpp jobo_qtmain.cpp jobo_qtmaindialog.cpp jobo_results.cpp jobo_simulation.cpp kewe_attractiveness.cpp kewe_attractivenesses.cpp kewe_gausser.cpp kewe_genotype_graph.cpp kewe_helper.cpp kewe_individual.cpp kewe_individuals.cpp kewe_jkr_adapters.cpp kewe_main.cpp kewe_output_parameters.cpp kewe_parameters.cpp kewe_qtdialog.cpp kewe_qtmain.cpp kewe_results.cpp kewe_ses.cpp kewe_simulation.cpp kewe_simulation_parameters.cpp pbd.cpp pbd_helper.cpp pbd_l_table.cpp pbd_l_table_row.cpp pbd_ltt.cpp pbd_main.cpp pbd_menu.cpp pbd_nltt_average_main.cpp pbd_nltt.cpp pbd_nltt_statistic_main.cpp pbd_parameters.cpp pbd_qtmain.cpp pbd_qtmaindialog.cpp ribi_create_tally.cpp ribi_dna.cpp ribi_helper.cpp ribi_hopefull_monster.cpp ribi_individual.cpp ribi_jkr_adapters.cpp ribi_main.cpp ribi_menu_dialog.cpp ribi_parameters.cpp ribi_pin.cpp ribi_population.cpp ribi_population_factory.cpp ribi_probability.cpp ribi_qtmain.cpp ribi_qtmaindialog.cpp ribi_results.cpp ribi_sil.cpp ribi_sil_frequency_edge.cpp ribi_sil_frequency_phylogeny.cpp ribi_sil_frequency_vertex.cpp ribi_sil_frequency_vertex_writer.cpp ribi_simulation.cpp ribi_species_id.cpp
.h files that will be analysed: cine_ann.h cine_individual.h cine_landscape.h cine_parameters.h cine_plot.h cine_population.h cine_simulation.h daic_helper.h daic_input.h daic_input_row.h daic_output.h daic_run.h daic_species_status.h elly_analyse.h elly_carrying_capacity.h elly_clade.h elly_clade_id.h elly_clades.h elly_event_rates.h elly_events.h elly_experiment.h elly_fwd.h elly_gillespie.h elly_helper.h elly_location.h elly_measurement.h elly_measurements.h elly_menu.h elly_n_species.h elly_parameters.h elly_per_species_rate.h elly_per_species_rates.h elly_populations.h elly_qtmaindialog.h elly_rate.h elly_result.h elly_results.h elly_simulation.h elly_species.h elly_species_id.h histogram_to_png.h jkr_experiment.h jobo_genotype.h jobo_genotypes.h jobo_individual.h jobo_individuals.h jobo_jkr_adapters.h jobo_parameters.h jobo_qtmaindialog.h jobo_results.h jobo_simulation.h kewe_attractivenesses.h kewe_attractiveness.h kewe_fwd.h kewe_gausser.h kewe_genotype_graph.h kewe_helper.h kewe_individual.h kewe_individuals.h kewe_jkr_adapters.h kewe_output_parameters.h kewe_parameters.h kewe_qtdialog.h kewe_results.h kewe_ses.h kewe_simulation.h kewe_simulation_parameters.h pbd.h pbd_helper.h pbd_l_table.h pbd_l_table_row.h pbd_ltt.h pbd_menu.h pbd_nltt.h pbd_nltt_statistic_main.h pbd_parameters.h pbd_qtmaindialog.h ribi_create_tally.h ribi_dna.h ribi_helper.h ribi_hopefull_monster.h ribi_individual.h ribi_jkr_adapters.h ribi_menu_dialog.h ribi_parameters.h ribi_pin.h ribi_population_factory.h ribi_population.h ribi_probability.h ribi_qtmaindialog.h ribi_results.h ribi_sil_frequency_edge.h ribi_sil_frequency_edge_writer.h ribi_sil_frequency_phylogeny.h ribi_sil_frequency_vertex.h ribi_sil_frequency_vertex_writer.h ribi_sil.h ribi_simulation.h ribi_species_id.h ribi_tally_to_str.h
Lumphie commented 7 years ago

It is included in do_oclint

cpp_files=`ls *.cpp | egrep -v "^jaan_.*\.cpp$"  | egrep -v "^lyke_.*\.cpp$" | egrep -v "^sado_.*\.cpp$" | egrep -v "^qrc_.*\.cpp$" | egrep -v "^moc_.*\.cpp$" | egrep -v "^.*_test\.cpp$"`
echo ".cpp files that will be analysed: "$cpp_files
h_files=`ls *.h | egrep -v "^jaan_.*\.h$" | egrep -v "^lyke_.*\.h$" | egrep -v "^sado_.*\.h$" | egrep -v "^ui_.*\.h$"`
echo ".h files that will be analysed: "$h_files
richelbilderbeek commented 7 years ago

Thanks! I've fixed it :-)