Closed richelbilderbeek closed 4 years ago
Describe the bug
'pir_params$evidence_filename' is absent in 'get_pir_params_filenames'
To Reproduce Script to reproduce the behavior:
pir_params <- create_test_pir_params() filenames <- get_pir_params_filenames(pir_params) expect_true(pir_params$evidence_filename %in% filenames)
Expected behavior
I expect 'pir_params$evidence_filename' to be present in 'get_pir_params_filenames'.
Screenshots NA
Environment: Show the results of running the following script:
library(mcbette) mcbette::mcbette_report()
> mcbette::mcbette_report() *********** * mcbette * *********** Can run mcbette: TRUE OS: unix **************** * Dependencies * **************** beautier version: 2.3.5 tracerer version: 2.0.4 beastier version: 2.1.3 mauricer version: 2.0.6 babette version: 2.1.2 ********** * BEAST2 * ********** Java version: 11.0.6+10-post-Ubuntu-1ubuntu119.10.1 Is BEAST2 installed: TRUE BEAST2 version: 2.6.1 BEAST2 default path: /home/richel/.local/share/beast/bin/beast ******************* * BEAST2 packages * ******************* Is BEAST2 NS package installed: TRUE BEAST2 NS installed version: 1.1.0 BEAST2 NS latest version: 1.1.0 *************** * sessionInfo * *************** R version 3.6.1 (2019-07-05) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 19.10 Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=nl_NL.UTF-8 LC_NAME=nl_NL.UTF-8 [9] LC_ADDRESS=nl_NL.UTF-8 LC_TELEPHONE=nl_NL.UTF-8 [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=nl_NL.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.6.1 magrittr_1.5 tools_3.6.1 curl_4.3 rappdirs_0.3.1 [6] beautier_2.3.5 mcbette_1.8.2 mauricer_2.0.6 stringi_1.4.6 beastier_2.1.3 [11] stringr_1.4.0 testit_0.11 rJava_0.9-11
Additional context None
Disagree with this bug report: if there are no candidates, the filename should not pop up.
Instead, give a warning.
Issue evolved into #405.
Closing this one.
Describe the bug
'pir_params$evidence_filename' is absent in 'get_pir_params_filenames'
To Reproduce Script to reproduce the behavior:
Expected behavior
I expect 'pir_params$evidence_filename' to be present in 'get_pir_params_filenames'.
Screenshots NA
Environment: Show the results of running the following script:
Additional context None