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richelbilderbeek
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pirouette
R package that estimates the error BEAST2 makes from a given phylogeny
GNU General Public License v3.0
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Add: create_dd_tree
#383
richelbilderbeek
closed
4 years ago
6
[ANALYSE] Check the effect of MCMC chain length on ESS estimation
#382
richelbilderbeek
closed
4 years ago
5
fixato lo stile, si spera
#381
Giappo
closed
4 years ago
0
Giovanni
#380
Giappo
closed
4 years ago
0
Develop
#379
Giappo
closed
4 years ago
0
Add 'get_sim_yule_twin_tree_fun'
#378
richelbilderbeek
closed
4 years ago
3
Re-run pirouette example 3
#377
richelbilderbeek
closed
4 years ago
3
Remove sapply
#376
richelbilderbeek
closed
4 years ago
3
update to latest version
#375
thijsjanzen
closed
4 years ago
0
Feature request: more error functions
#374
richelbilderbeek
closed
4 years ago
1
Add example to reproduce Sarver et al., 2019
#373
richelbilderbeek
closed
4 years ago
2
Add example to reproduce Revell et al., 2015
#372
richelbilderbeek
closed
4 years ago
2
Add functionality to implement multiple error functions
#371
thijsjanzen
closed
4 years ago
13
Update Thijs Branch
#370
thijsjanzen
closed
4 years ago
0
Replace 'true_alignment' by 'tral', 'twin_alignment' by 'twal'
#369
richelbilderbeek
closed
4 years ago
9
Giovanni
#368
Giappo
closed
4 years ago
1
Put pirouette ms on BioRxiv
#367
richelbilderbeek
closed
4 years ago
1
Rename 'lambda' and 'mu' to 'speciation_rate' and 'extinction_rate'
#366
richelbilderbeek
closed
4 years ago
7
Develop
#365
Giappo
closed
4 years ago
0
Do short run with unusual logging intervals
#364
richelbilderbeek
closed
4 years ago
0
Twin alignment is not saved
#363
richelbilderbeek
closed
4 years ago
1
Rename `(un)linked_node_sub` to `uns` and `lns`
#362
richelbilderbeek
closed
4 years ago
5
How come coalescent models are so often picked?
#361
richelbilderbeek
closed
4 years ago
1
Check pirouette on Windows
#360
richelbilderbeek
closed
4 years ago
1
Richel
#359
Giappo
closed
4 years ago
0
update
#358
Giappo
closed
4 years ago
0
test-sim_twin_alignment does not pass locally on Windows
#357
Giappo
closed
4 years ago
3
How well does 'get_sim_twin_alignment_with_same_n_mutation_function' work under poor conditions?
#356
richelbilderbeek
closed
4 years ago
1
Merge pull request #354 from richelbilderbeek/master
#355
Giappo
closed
4 years ago
0
pushback
#354
Giappo
closed
4 years ago
0
pirouette::sim_bd_twin_tree must have no 'seed' argument
#353
richelbilderbeek
closed
4 years ago
4
razzo must use the new babette interface
#352
richelbilderbeek
closed
4 years ago
7
peregrine must use new babette interface
#351
richelbilderbeek
closed
4 years ago
4
small changes
#350
Giappo
closed
4 years ago
0
DDD causes Travis build error?
#349
richelbilderbeek
closed
4 years ago
2
A twin tree function should return an ultrametric tree
#348
richelbilderbeek
closed
4 years ago
1
Creating a twin tree twice with different seeds should result in different trees
#347
richelbilderbeek
closed
4 years ago
1
Twin tree must have the same number of taxa
#346
richelbilderbeek
closed
4 years ago
1
Twin tree must have the same labels
#345
richelbilderbeek
closed
4 years ago
1
Rename 'create_sim_bd_twin_tree_fun' to 'get_sim_bd_twin_tree_fun'
#344
richelbilderbeek
closed
4 years ago
1
Deprecate error_measure_params$burn_in_fraction
#343
richelbilderbeek
closed
4 years ago
1
Cannot create branching times for a Yule tree
#342
richelbilderbeek
closed
4 years ago
3
All candidate experiments must work on the same BEAST2 input file
#341
richelbilderbeek
closed
4 years ago
1
Allow twinning_params to specify twin tree and twin alignment function
#340
richelbilderbeek
closed
4 years ago
0
twin alignment must be different from true alignment when using (un)linked_node_sub
#339
richelbilderbeek
closed
4 years ago
0
(un)linked_node_sub must create an alignment of the right length
#338
richelbilderbeek
closed
4 years ago
0
Add MacOS to Travis again
#337
richelbilderbeek
closed
4 years ago
1
Thijs ehh, wait... I don't think this is what I want to do.
#336
thijsjanzen
closed
4 years ago
1
Think of three names for nodeSub models
#335
richelbilderbeek
closed
4 years ago
8
Feature request: add Pigot's delta-r to the error measurement functions
#334
richelbilderbeek
closed
4 years ago
1
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