Write 'collect_run_times'

[richelbilderbeek]

Here are the run times:

run_times.zip

[richelbilderbeek]

Here is the figure, vertical lines denote the mean time.

[richelbilderbeek]

As table:

date	mean
20190621	262.9167
20190717	332.6250
20190801	2318.3750
20190808	2444.7917
20190815	5863.6458
20190827	154.5000
20190829	11916.7111

[richelbilderbeek]

The human-interpreted table, of only the useful/full runs:

date	mean (in hours)	crown_age	n_candidates
20190801	0.6439931	6	3
20190808	0.6791088	6	3
20190815	1.6287905	7	3
20190829	3.3101975	6	40
20190903	4.1418981	6	40

• [*] candidate models selected from options at razzo Issue 261:
  • 1: old skool: GTR, RLN, Yule
  • 2: all 39 models
  • 3: simplest 3 candidates: only (JC69 || HKY), strict, (Yule || BD)

This is for two replicates per parameter combination.

[richelbilderbeek]

• going from crown age 6 to 7: x2.4
• from candidate selection option 1 to 2: at least x5, as I stopped 4 longer runs

[richelbilderbeek]

In number of hours:

date	mean	crown_age	n_candidates
20190801	0.6439931	6	3
20190808	0.6791088	6	3
20190815	1.6287905	7	3
20190829	3.3101975	6	40
20190903	4.1418981	6	40

• [*] candidate models selected from options at razzo Issue 261:
  • 1: old skool: GTR, RLN, Yule
  • 2: all 39 models
  • 3: simplest 3 candidates: only (JC69 || HKY), strict, (Yule || BD)

This is for two replicates per parameter combination.

[richelbilderbeek]

Note that the 20190903 run is missing, with crown age = 6, candidate option = 3 Fixed it!

[richelbilderbeek]

New run:

date	mean	crown_age	n_candidates
20190801	0.6439931	6	3
20190808	0.6791088	6	3
20190815	1.6287905	7	3
20190829	3.3101975	6	40
20190903	4.1418981	6	40
20190904	0.6348322	6	4

[richelbilderbeek]

Works great! Closing this Issue!