search

richelbilderbeek / reports

I write quite some bug reports. I keep them here
GNU General Public License v3.0
0 stars 0 forks source link

Request code for Bianchi et al., 2020 #11

Open richelbilderbeek opened 3 years ago

richelbilderbeek commented 3 years ago 
Code to reproduce 'Mutational Screening of the Proteome of Sars-Cov-2 Isolates' by Bianchi et al., preprint

29 September 2020 11:59 3 KB
From:
Richel Bilderbeek
To: [...]

Dear proefessor Pascarella,

With great interest I have read your work done by Martina and others:

'Mutational Screening of the Proteome of Sars-Cov-2 Isolates: Mutability of ORF3a, Nucleocapsid and Nsp2 Proteins' by Martina Bianchi, Domenico Benvenuto, Massimo Ciccozzi, Stefano Pascarella. Preprint at https://www.preprints.org/manuscript/202007.0049/v1

I am a postdoc working on very similar things [1] and I would enjoy to reproduce this work, possibly to build a new research project upon (sure I'll add a reference to this manuscript :-) ).

Would you be willing and able to share the code and/or scripts?

Thanks and cheers, Richel Bilderbeek, postdoc, https://www.rug.nl/staff/r.j.c.bilderbeek/

 * [1] Among others, I wrote two R packages to do TMH prediction, one of which calls TMHMM (as used in the manuscript), https://github.com/richelbilderbeek/tmhmm