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richfitz / diversitree

diversitree: comparative phylogenetic analyses of diversification
http://www.zoology.ubc.ca/prog/diversitree
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I can't install diversitree in linux (R version 4.1.0 (2021-05-18) -- "Camp Pontanezen") #31

Open rgarciasandoval opened 3 years ago

rgarciasandoval commented 3 years ago

Hi

I can Install diversitree, I am always having the error

/usr/bin/ld: /usr/local/lib/libfftw3.a(assert.o): relocation R_X86_64_PC32 against symbol `stdout@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: bad value collect2: error: ld returned 1 exit status make: *** [/usr/share/R/share/make/shlib.mk:10: diversitree.so] Error 1 ERROR: compilation failed for package ‘diversitree’

Even if I clone the github repository and install from the console, I am always getting the same error....

I am on linux mint 20.1, and yes I am sure I have the libfftw3 installed

libfftw3-dev is already the newest version (3.3.8-2ubuntu1).

Any help may be welcome

cheers

richfitz commented 3 years ago

I can install this on ubuntu 20.04/R 4.1.0:

Details ``` R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.packages("diversitree") Installing package into ‘/home/rfitzjoh/lib/R/library’ (as ‘lib’ is unspecified) trying URL 'https://cloud.r-project.org/src/contrib/diversitree_0.9-15.tar.gz' Content type 'application/x-gzip' length 363036 bytes (354 KB) ================================================== downloaded 354 KB * installing *source* package ‘diversitree’ ... ** package ‘diversitree’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes Using fftw for QuaSSE FFT calculations checking for gsl-config... /usr/bin/gsl-config checking if GSL version >= 1.15... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c GslOdeBase.cpp -o GslOdeBase.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c GslOdeCompiled.cpp -o GslOdeCompiled.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c GslOdeR.cpp -o GslOdeR.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c GslOdeTime.cpp -o GslOdeTime.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c Spline.cpp -o Spline.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c TimeMachine.cpp -o TimeMachine.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c asr-joint.c -o asr-joint.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c bd-eqs.c -o bd-eqs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c bisse-eqs.c -o bisse-eqs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c bisseness-eqs.c -o bisseness-eqs.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c bucexp.f -o bucexp.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c classe-eqs.c -o classe-eqs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c continuous.c -o continuous.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c derivs.c -o derivs.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c dgcoov.f -o dgcoov.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c dgexpvi.f -o dgexpvi.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c dgpadm.f -o dgpadm.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c dmexpv.f -o dmexpv.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c dnchbv.f -o dnchbv.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c dsexpv.f -o dsexpv.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c dsexpvi.f -o dsexpvi.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c expm.f -o expm.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c geosse-eqs.c -o geosse-eqs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c hdr.c -o hdr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c hyperg.f -o hyperg.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -c interface.cpp -o interface.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c mkn-eqs.c -o mkn-eqs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c mkn-expokit.c -o mkn-expokit.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c mkn-meristic-eqs.c -o mkn-meristic-eqs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c mkn-pij.c -o mkn-pij.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c musse-eqs.c -o musse-eqs.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c nucexp.f -o nucexp.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c quasse-eqs-fftC.c -o quasse-eqs-fftC.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c quasse-eqs-mol.c -o quasse-eqs-mol.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c rfftw.c -o rfftw.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c scm-mkn.c -o scm-mkn.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c simulate-bisse.c -o simulate-bisse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c util-matrix.c -o util-matrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c util-splines.c -o util-splines.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c util.c -o util.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I. -I/usr/include -I'/home/rfitzjoh/lib/R/library/Rcpp/include' -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -fpic -std=gnu17 -g -Wall -Wextra -pedantic -Wmaybe-uninitialized -Wno-unused-parameter -Wno-cast-function-type -Wno-missing-field-initializers -O2 -Werror=implicit-function-declaration -c zzz.c -o zzz.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o diversitree.so GslOdeBase.o GslOdeCompiled.o GslOdeR.o GslOdeTime.o Spline.o TimeMachine.o asr-joint.o bd-eqs.o bisse-eqs.o bisseness-eqs.o bucexp.o classe-eqs.o continuous.o derivs.o dgcoov.o dgexpvi.o dgpadm.o dmexpv.o dnchbv.o dsexpv.o dsexpvi.o expm.o geosse-eqs.o hdr.o hyperg.o interface.o mkn-eqs.o mkn-expokit.o mkn-meristic-eqs.o mkn-pij.o musse-eqs.o nucexp.o quasse-eqs-fftC.o quasse-eqs-mol.o rfftw.o scm-mkn.o simulate-bisse.o util-matrix.o util-splines.o util.o zzz.o -lfftw3 -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /home/rfitzjoh/lib/R/library/00LOCK-diversitree/00new/diversitree/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diversitree) The downloaded source packages are in ‘/tmp/RtmpRhIFgG/downloaded_packages’ ```

The package is also compiling on R 4.1 on the CRAN check platforms: https://cran.r-project.org/web/checks/check_results_diversitree.html

This is probably something broken in your local package installations - google suggests glibc?

I can't provide general diversitree help I am sorry, and am no longer working in this field.

rgarciasandoval commented 3 years ago

Hi there

Thanks a lot for your post, well not sure if is my linux version, or what, I had no problems with R4.0, but after self update I had to re-install all my packages, and just had troubles with diversitree. Ok I will keep looking, thanks a lot for your time

Best!

Ricardo

rgarciasandoval commented 2 years ago

Hi there, just as a follow up

The problem was the fftw3 compiler, I made an incorrect install, because sheared libraries was disabled so I had to remove the compiler directly from the console with sudo apt remove fftw3, and then re-install with the shared libraries option active ...ah...silly me :)