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richfitz / diversitree

diversitree: comparative phylogenetic analyses of diversification
http://www.zoology.ubc.ca/prog/diversitree
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OU calculations on non-ultrametric trees #6

Open richfitz opened 10 years ago

richfitz commented 10 years ago

See email from Pennell (7/12/2013), http://www.zoology.ubc.ca/prog/diversitree/examples/ou-nonultrametric/ and 

library(diversitree)
set.seed(2)
tree <- rtree(100)
x <- rTraitCont(tree)
lik.ou.v <- make.ou(tree, x, control=list(method="vcv"))
lik.ou.p  <- make.ou(tree, x,
                     control=list(method="pruning", backend="C"))