data: get pngs - Githubissues

ridatadiscoverycenter / react-aframe-volume-renderer

afreame-webgl2 volumen renderer as a reactjs app

MIT License

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data: get pngs #2

Closed mirestrepo closed 2 years ago

mirestrepo commented 3 years ago

There will be 8 volumes, 4 for salinity, 4 for temperature. low tide, high tide for summer and winter.

[x] Delete nrrds
[x] Extract Data
[x] Merge PR with data

Jan 15, Jul 15

eldu commented 3 years ago

Notion

Diagram

eldu commented 3 years ago

Repo for the data scripts - https://github.com/brown-ccv/matlab_nc_converter

eldu commented 3 years ago

Name the files with salinity/temp, low/high tide, and winter/summer.

eldu commented 3 years ago

File Format name

season_tide_variable.nrrd

season is winter/summer tide is low/high variable is salt/temp

ex/ summer_low_salt.nrrd

kmilo9999 commented 2 years ago

We dont actually need nrrds. We need the raw files given by the matlab script, convert them to tiff image series and then transforming them to 2D pngs. The current pipeline needs to be scripted (and improved). At this moment I am converting raw to tiff series using FIJI.