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rietho / IPO

A Tool for automated Optimization of XCMS Parameters
http://bioconductor.org/packages/IPO/
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At least 80% of man pages documenting exported objects must have runnable examples. #23

Closed sneumann closed 9 years ago

sneumann commented 9 years ago 
* Checking exported objects have runnable examples...
    * REQUIRED: At least 80% of man pages documenting exported objects
      must have runnable examples.The following pages do not:
      calcPPS.Rd, calculateXcmsSet.Rd, findIsotopes.CAMERA.Rd,
  findIsotopes.IPO.Rd, getRGTVValues.Rd, optimizeRetGroup.Rd,
  optimizeXcmsSet.Rd, writeParamsTable.Rd, writeRScript.Rd
glibiseller commented 9 years ago

Hi Steffen,

update to 1.7.3 fixed the requirements

Summary:
REQUIRED count: 0
RECOMMENDED count: 2
CONSIDERATION count: 4
For detailed information about these checks, see the BiocCheck
vignette, available at
http://www.bioconductor.org/packages/3.1/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#Interpreting_BiocCheck_output
$requirements
character(0)

$recommendations
[1] "Evaluate more vignette chunks."              
[2] "y of x.y.z version should be even in release"

$considerations
[1] "Adding runnable examples to the following man pages which document exported objects:"
[2] "Shortening lines; 189 lines (5%) are > 80 characters long."                          
[3] "Replacing tabs with 4 spaces; 373 lines (11%) contain tabs."                         
[4] "Indenting lines with a multiple of 4 spaces; 978 lines (29%) are not."

Cheers, Gunnar