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rietho / IPO

A Tool for automated Optimization of XCMS Parameters
http://bioconductor.org/packages/IPO/
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Installing IPO error #34

Closed jjkellogg closed 8 years ago

jjkellogg commented 8 years ago

I'm a bit of an R novice, but when installing IPO with R 3.2.2, I get the following error:

install_github("glibiseller/IPO") Downloading GitHub repo glibiseller/IPO@master Installing IPO "C:/Program Files/R/R-32~1.2/bin/x64/R" --no-site-file --no-environ --no-save --no-restore CMD INSTALL \ "C:/Users/jjkellog/AppData/Local/Temp/Rtmpqkznw3/devtools5b863d91ce0/glibiseller-IPO-47aff39" \ --library="C:/Users/jjkellog/Documents/R/win-library/3.2" --install-tests

'C:\Program' is not recognized as an internal or external command, operable program or batch file. Error: Command failed (1)

Everything else, the devtools and Rtools, installed just fine, it is getting IPO installed that is serving up this error.

rietho commented 8 years ago

This seems to be a windows installing issue. Please see the following thread for a possible solution. I hope this helps.

jjkellogg commented 8 years ago

Thank you! I don't usually use a Windows machine, so the error tripped me up. But that thread helped me get the paths right, and it's working just fine. Thank you again!