limit optimizeRetGroup() to group.density

rietho / IPO

A Tool for automated Optimization of XCMS Parameters

http://bioconductor.org/packages/IPO/

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limit optimizeRetGroup() to group.density #5

Closed sneumann closed 6 years ago

sneumann commented 9 years ago

Hi, currently, optimizeRetGroup() optimises all parameters for all group() methods. It would be great if the method(s) could be restricted, e.g. retcorGroupParameters$groupMethod=c("density", "obiwarp") or just retcorGroupParameters$groupMethod="density" Yours, Steffen

glibiseller commented 9 years ago

The function getDefaultRetGroupStartingParams has now a parameter retcorMethod which lets you choose "obiwarp", "loess" and "none" (if you dont want retention time correction done)

Does this change satisfy this issue?

Yours, Gunnar

rietho commented 7 years ago

@sneumann Is there still something to do?