Problem processing downloaded PDBs

[hlasimpk]

General Information

• SIMBAD version: 0.1.11
• Python version: ccp4-python
• Environment (if applicable): CCP4

Example

A minimal example to reproduce the error:

simbad-lattice $CCP4/examples/rnase/rnase18.mtz

Traceback

The Python traceback

**********************************************************************
*******************          SIMBAD_ERROR          *******************
**********************************************************************

SIMBAD exited with message: file /var/folders/1t/_dp5cn017mg_f2qc7h0qds5h0000gn/T/tmpSzLvRT.pdb, line 6777:
  ANISOU 3
  ------------^
  name mismatch.

**********************************************************************

If you believe that this is an error with SIMBAD, please email: ccp4@stfc.ac.uk
providing as much information as you can about how you ran the program.

SIMBAD EXITING AT...
Traceback (most recent call last):
  File "/Users/adamsimpkin/dev/SIMBAD/simbad/command_line/simbad_lattice.py", line 103, in <module>
    main()
  File "/Users/adamsimpkin/dev/SIMBAD/simbad/command_line/simbad_lattice.py", line 72, in main
    solution_found = simbad.command_line._simbad_lattice_search(args)
  File "/Applications/ccp4-7.0/lib/py2/simbad/command_line/__init__.py", line 477, in _simbad_lattice_search
    ls.download_results(lattice_mod_dir)
  File "/Applications/ccp4-7.0/lib/py2/simbad/lattice/latticesearch.py", line 339, in download_results
    struct = simbad.util.pdb_util.PdbStructure(f_tmp_out.name)
  File "/Applications/ccp4-7.0/lib/py2/simbad/util/pdb_util.py", line 26, in __init__
    self.pdb_input = iotbx.pdb.pdb_input(file_name=pdbin)
  File "/Applications/ccp4-7.0/lib/py2/site-packages/cctbx_project/iotbx/pdb/__init__.py", line 727, in pdb_input
    lines=flex.split_lines(smart_open.for_reading(file_name).read()))
ValueError: file /var/folders/1t/_dp5cn017mg_f2qc7h0qds5h0000gn/T/tmpSzLvRT.pdb, line 6777:
  ANISOU 3
  ------------^
  name mismatch.