Contact map superposition shows all contacts in PDB - Githubissues

rigdenlab / conkit

Contact Prediction ToolKit

https://www.conkit.org/en/latest/

BSD 3-Clause "New" or "Revised" License

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Contact map superposition shows all contacts in PDB #91

Closed FilomenoSanchez closed 2 years ago

FilomenoSanchez commented 2 years ago

General Information

ConKit version: commit https://github.com/rigdenlab/conkit/commit/9ee7f76b0374450d5a44b3a5696e418eb4be3bb4
Python version: python 3.8

Example

$> conkit-plot cmap -p toxd/toxd.pdb -pf pdb toxd/toxd.fasta fasta toxd/toxd.mat ccmpred

Traceback

There is no traceback, the expected behaviour would be to only display structural contacts between residues that are within 8A of each other.