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rikuu / Gap2Seq

Gap2Seq is a gap filling and insertion genotyping tool.
GNU Affero General Public License v3.0
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error running #15

Open jarojasva opened 3 years ago

jarojasva commented 3 years ago

Cut 71 scaffolds into 71 contigs and 0 gaps Traceback (most recent call last): File "./Gap2Seq", line 445, in args['bed'], args['gaps'] = cut_gaps(args['k'], args['fuz'], args['mask'], args['scaffolds']) File "./Gap2Seq", line 311, in cut_gaps return open(bed_file, 'r'), open(gap_file, 'r') FileNotFoundError: [Errno 2] No such file or directory: 'tmp.gaps'

What should I do?

ens-LCampbell commented 2 years ago

@jarojasva Any chance you ever got any sort of reply regarding this error ? I have the exact same issue. Doesn't seem to be any support for this package anymore by the looks of it :(

ammaraziz commented 7 months ago

I think this is related to https://github.com/rikuu/Gap2Seq/issues/11 that is when no gaps are filled it returns an error due to a missing file.