Adapt-Imd

[MTLehner]

Adapt Imd is a feature that should make some basic sanity checks, however it should always be able to turn it off. Gromos_system offers this feature, but it is not past along in some cases (for example to simulations systems) In some of these cases it can lead to a undesired change of the imd files.

TODO:

• [x] add options to turn of adapt_imd to all places that call adapt_imd
• [x] make sure these options are handed along top down to all involved classes
• [x] testing

[MTLehner]

@katzberger please add an example of the bug for testing purpose

[MTLehner]

@katzberger @candidechamp The wrong (automatic) override of adapt_imd_automatically=True was in the imd setter. I made adapt_imd_automatically a parameter of gromos_system. This means if adapt_imd_automatically is set to False in the initializer or self.adapt_imd_automatically=False is set later adding a imd won't automatically call adapt_imd