pep8

[MTLehner]

Description

This PR fixes code style to follow pep8 standards

• code style fixes
• correct TODOs
• flake8 hook activation

[lgtm-com[bot]]

This pull request fixes 122 alerts when merging 8f18700cb972bc1390791198aac59ec41aeb3873 into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 1 for Module is imported more than once
• 1 for 'import *' may pollute namespace
• 1 for Variable defined multiple times

[lgtm-com[bot]]

This pull request fixes 122 alerts when merging 2f4ea2f530d859dea6c8b848e32d7065e68902a1 into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 1 for Module is imported more than once
• 1 for 'import *' may pollute namespace
• 1 for Variable defined multiple times

[codecov[bot]]

Codecov Report

Merging #236 (477d45d) into release3 (017c7a0) will increase coverage by 0.05%. The diff coverage is 45.70%.

@@             Coverage Diff              @@
##           release3     #236      +/-   ##
============================================
+ Coverage     54.68%   54.74%   +0.05%     
============================================
  Files            91       91              
  Lines         13859    13845      -14     
============================================
  Hits           7579     7579              
+ Misses         6280     6266      -14     

Flag	Coverage Δ
unittests	54.74% <45.70%> (+0.05%)	:arrow_up:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
pygromos/data/ff/addAtomType.py	0.00% <0.00%> (ø)
pygromos/files/blocks/miscBlocks.py	90.00% <ø> (-0.17%)	:arrow_down:
pygromos/files/coord/posres.py	65.21% <ø> (-6.22%)	:arrow_down:
pygromos/files/gromos_system/ff/amber2gromos.py	15.96% <ø> (-0.71%)	:arrow_down:
...gromos/files/gromos_system/ff/solvents/Solvents.py	0.00% <0.00%> (ø)
pygromos/files/gromos_system/ff/solvents/_base.py	0.00% <0.00%> (ø)
pygromos/files/otherfiles/new_repdat.py	0.00% <0.00%> (ø)
pygromos/files/otherfiles/noe_output.py	0.00% <0.00%> (ø)
pygromos/files/otherfiles/repdat.py	42.19% <0.00%> (ø)
pygromos/files/topology/disres.py	100.00% <ø> (ø)
... and 49 more

---

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 017c7a0...477d45d. Read the comment docs.

[lgtm-com[bot]]

This pull request fixes 123 alerts when merging 01997e57ae110d68e2d381bb358572acf510cddd into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 1 for Module is imported more than once
• 1 for Non-callable called
• 1 for 'import *' may pollute namespace
• 1 for Variable defined multiple times

[lgtm-com[bot]]

This pull request fixes 123 alerts when merging f586e6457c5ba523927627a866e2be25f32a4914 into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 1 for Module is imported more than once
• 1 for Non-callable called
• 1 for 'import *' may pollute namespace
• 1 for Variable defined multiple times

[lgtm-com[bot]]

This pull request fixes 123 alerts when merging 6c0d16d95f4044115e0dd31929baa525f825ef56 into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 1 for Module is imported more than once
• 1 for Non-callable called
• 1 for 'import *' may pollute namespace
• 1 for Variable defined multiple times

[lgtm-com[bot]]

This pull request fixes 123 alerts when merging b8510e3b084f5ba026d1ed3f53c61d8899223c37 into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 1 for Module is imported more than once
• 1 for Non-callable called
• 1 for 'import *' may pollute namespace
• 1 for Variable defined multiple times

[lgtm-com[bot]]

This pull request fixes 124 alerts when merging 13f0c164b631ff1dd1d0965ee9cf1f52756c6a0b into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 2 for 'import *' may pollute namespace
• 1 for Module is imported more than once
• 1 for Non-callable called
• 1 for Variable defined multiple times

[lgtm-com[bot]]

This pull request fixes 124 alerts when merging 5d01b7bfc63740d6ef65b30a9861cdb6230ebec5 into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 2 for 'import *' may pollute namespace
• 1 for Module is imported more than once
• 1 for Non-callable called
• 1 for Variable defined multiple times

[lgtm-com[bot]]

This pull request fixes 124 alerts when merging 477d45dd04dfac5ceb948c15e840bafc6aa948ef into 017c7a038be8ab39d4375d87359e145658a695e2 - view on LGTM.com

fixed alerts:

• 43 for Unused local variable
• 29 for Unused import
• 23 for Testing equality to None
• 21 for Except block handles 'BaseException'
• 3 for Unreachable code
• 2 for 'import *' may pollute namespace
• 1 for Module is imported more than once
• 1 for Non-callable called
• 1 for Variable defined multiple times