Hi @rjchallis - I came across your repo yesterday and I'm very eager to use assembly-stats because I have been wanting to visualize my assembly stats just like your tool does. I spent a lot of time looking at the circulize package in R, but it's a beast with which I don't wish to mess.
But before I use your scripts, I have a few questions, please. I work with metagenomic assembled genomes (MAGs) which are essentially a bunch of single genomes. I want to compare the assembly stats of about 10-20 MAGs per sample, so can I:
Compare more than two genomes/MAGs at the same time using your tool?
Use genome completion stats from CheckM instead of CEGMA?
Include coverage data in the circular plots for each genome/MAG?
I look forward to hearing from you. Thank you so much for your help!
Hi @rjchallis - I came across your repo yesterday and I'm very eager to use
assembly-statsbecause I have been wanting to visualize my assembly stats just like your tool does. I spent a lot of time looking at the circulize package in R, but it's a beast with which I don't wish to mess.But before I use your scripts, I have a few questions, please. I work with metagenomic assembled genomes (MAGs) which are essentially a bunch of single genomes. I want to compare the assembly stats of about 10-20 MAGs per sample, so can I:
I look forward to hearing from you. Thank you so much for your help!
Taruna