rjpbonnal bioruby-ngs issues

rjpbonnal / bioruby-ngs

This plugins is intended to wrap the common software used for Next Generation Sequencing data

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issues

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Bump activerecord from 3.2.13 to 6.1.7.1

#58 dependabot[bot] opened 1 year ago
0
Bump git from 1.2.5 to 1.13.0

#57 dependabot[bot] opened 1 year ago
0
Bump nokogiri from 1.5.9 to 1.13.9

#56 dependabot[bot] opened 1 year ago
0
Bump addressable from 2.3.4 to 2.8.1

#55 dependabot[bot] opened 1 year ago
0
Bump tzinfo from 0.3.37 to 0.3.61

#54 dependabot[bot] opened 2 years ago
0
Bump activerecord from 3.2.13 to 5.2.8.1

#53 dependabot[bot] closed 1 year ago
1
Bump nokogiri from 1.5.9 to 1.13.6

#52 dependabot[bot] closed 1 year ago
1
Bump git from 1.2.5 to 1.11.0

#51 dependabot[bot] closed 1 year ago
1
Bump nokogiri from 1.5.9 to 1.13.4

#50 dependabot[bot] closed 2 years ago
1
Bump nokogiri from 1.5.9 to 1.13.3

#49 dependabot[bot] closed 2 years ago
2
Bump nokogiri from 1.5.9 to 1.12.5

#48 dependabot[bot] closed 2 years ago
1
Bump rdoc from 4.0.1 to 6.3.2

#47 dependabot[bot] opened 3 years ago
0
Bump addressable from 2.3.4 to 2.8.0

#46 dependabot[bot] closed 1 year ago
1
Bump nokogiri from 1.5.9 to 1.11.4

#45 dependabot[bot] closed 2 years ago
1
Bump json from 1.7.7 to 2.3.0

#44 dependabot[bot] opened 4 years ago
0
Bump rack from 1.5.2 to 2.2.3

#43 dependabot[bot] opened 4 years ago
0
Bump rake from 10.0.4 to 12.3.3

#42 dependabot[bot] opened 4 years ago
0
Bump nokogiri from 1.5.9 to 1.10.8

#41 dependabot[bot] closed 3 years ago
1
Bump rack from 1.5.2 to 2.0.8

#40 dependabot[bot] closed 4 years ago
1
Bump nokogiri from 1.5.9 to 1.10.5

#39 dependabot[bot] closed 4 years ago
1
Fix typographical error(s)

#38 orthographic-pedant opened 8 years ago
0
Tophat: fastq.gz and generic paired names

#37 rjpbonnal opened 12 years ago
0
Shift to Trimmomatic

#36 fstrozzi opened 12 years ago
2
Keep installed binaries/compiled application when reinstalling

#35 rjpbonnal opened 12 years ago
0
Create new reference annotation merging different gtf files

#34 valeria11 opened 12 years ago
0
ActiveRecord 3.2.5 problems

#33 fstrozzi opened 12 years ago
0
support demultiplexing

#32 valeria11 opened 12 years ago
1
Conventional names for files

#31 rjpbonnal opened 12 years ago
0
Tasks that do not depend on project:new

#30 rjpbonnal opened 12 years ago
0
Use gnuplot?

#29 rjpbonnal opened 12 years ago
1
Create Requirements for README

#28 rjpbonnal opened 12 years ago
1
Use Markdown for documentation

#27 rjpbonnal closed 12 years ago
2
Update README

#26 rjpbonnal closed 12 years ago
0
user can install tools after installation

#25 rjpbonnal closed 12 years ago
0
field separator

#24 valeria11 closed 12 years ago
0
Remove qseq tasks

#23 fstrozzi opened 12 years ago
2
Support Cufflinks 1.2.0

#22 rjpbonnal closed 12 years ago
0
PKG-CONFIG error in Mac OS X

#21 fstrozzi opened 12 years ago
0
Can not execute third party software

#20 rjpbonnal closed 12 years ago
0
Support new CASAVA 1.8

#19 rjpbonnal opened 13 years ago
0
Support BioLinux

#18 rjpbonnal closed 13 years ago
1
Minor fix for quality task.

#17 robsyme closed 13 years ago
1
BioNGS background jobs (EXPERIMENTAL)

#16 fstrozzi closed 12 years ago
1
scatter plot for cufflinks quantification values

#15 valeria11 closed 13 years ago
0
Implementation of Homology and Ontology classes

#14 fstrozzi closed 13 years ago
0
wrapper parameters or arguments

#13 rjpbonnal closed 12 years ago
1
Fixed a bug for hash options frozen

#12 fstrozzi closed 13 years ago
0
Validate directory/project structure before running a task

#11 rjpbonnal opened 13 years ago
0
Wrapper: add documentation

#10 rjpbonnal closed 12 years ago
1
External programs need to find other programs

#9 rjpbonnal closed 13 years ago
1